We are happy to announce the 2016 SeqAn user meeting supported by the CIBI (Center for integrative Bioinformatics), a member of of the de.NBI (German Network for Bioinformatics infrastructure).
The meeting will take place at FU Berlin from March 30th to April 1st 2016. The SeqAn user meeting is addressing bioinformatics students and professionals who want to develop efficient applications for NGS analysis based on an efficient, well-maintained C++ library. In the meeting you will hear talks from groups who actively use SeqAn in their daily work, you will hear about how some of the SeqAn apps work and how they were developed, and finally you get hands-on tutorials to get you started with developing your own SeqAn apps and include them into workflow systems such as KNIME.
Please sign up using this form. The deadline was March 14th 2016 and is now closed.
The meeting will be at the
Freie Universität Berlin,
Institute for Computer Science,
Takustrasse 9, 14195 Berlin,
Room SR 005 (ground floor).
Contact:
Prof. Knut Reinert – knut.reinert (at) fu-berlin.de
Secretary’s Office – anja.kasseckert (at) fu-berlin.de
Below you can see a preliminary schedule.
|
Time\Date |
Wednesday |
Thursday |
Friday April |
|
|
09:00-10:30 |
Welcome and Introduction |
App session 1: Mason App session 2: Imseq |
Tutorial 1: CLP Tutorial 2: Sequences/Iterators |
Tutorial 7: Basic File I/O Tutorial 8: Advanced File I/O |
|
10:30-11:00 |
Break |
Break |
Break |
|
|
11:00-12:30 |
Invited talk 1: Whole-genome sequence analysis of 20,000 Icelanders Invited talk 2: IsomiR-SEA: A new powerful profiling tool reveals novel biological miRNAs and isomiRs features hidden in small RNA-Seq samples. |
App session 3: Lambda App session 4: App session 5: Stellar Talk to Developers |
Tutorial 3: Alignment representation Marcel Ehrhardt Tutorial 4: Alignment algorithms Rene Rahn |
Tutorial 9: Q-Nexus workflow: Extending with KNIME nodes Tutorial 10: Q-Nexus workflow: Developing a new SeqAn node |
|
12:30-14:00 |
Lunch |
Lunch |
Lunch |
|
|
14:00-15:30 |
SeqAn technical talk Introduction to KNIME
|
App session 6: iPec App session 7: KNIME and SeqAn |
Tutorial 5: Indices 1 Tutorial 6: Indices 2 |
Tutorial 11: KNIME integration of SeqAn nodes 1 Tutorial 12: KNIME integration od SeqAn nodes 2 |
|
15:30-16:00 |
Break |
Break |
End of meeting |
|
|
16:00-18:00 |
Introduction tutorial
|
Social Event: Tapas Bar |
|
|